PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G234400.1
Common NameB456_011G234400, LOC105778685
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 373aa    MW: 41235.3 Da    PI: 7.3854
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G234400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.50.0009146168123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         y+C+ C+++F++   L  H  +H
  Gorai.011G234400.1 146 YECKTCNRTFPSFQALGGHRASH 168
                         99**********99999998887 PP

2zf-C2H212.90.00034255277123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C++Cg  F++   L  H+r+H
  Gorai.011G234400.1 255 HECSICGSEFTSGQALGGHMRRH 277
                         78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.73E-8145168No hitNo description
PfamPF139123.5E-13145170IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.637146173IPR007087Zinc finger, C2H2
SMARTSM003550.052146168IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280148168IPR007087Zinc finger, C2H2
SuperFamilySSF576671.73E-8250277No hitNo description
Gene3DG3DSA:3.30.160.603.7E-4253279IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.6E-11254279IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.367255282IPR007087Zinc finger, C2H2
SMARTSM003550.019255277IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280257277IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MEAPEEVPVG SKDQTNNIIV KGKRTKRLRP QSPIPFAIAS NNSIFNGDNV VNMENNNNNY  60
GEYLSLSSSS DNYQDSTTEE EEDMANCLIL LAQGQSREPP PKLLQQPNDH HPHQQHDPGV  120
VYNKFNSRRF MEAASNGDGK AGYYVYECKT CNRTFPSFQA LGGHRASHKK PKAAATIDEK  180
IRQFTAGTTT IGLSDEEEGQ HQQQQFMKTN NVSSLSLQLS NTNNYNNHNI NNRVLYGNSN  240
KDNNNNNNGK PNKVHECSIC GSEFTSGQAL GGHMRRHRGS IGGGSNSAVA ANTALSLKVA  300
TPLEQPQQPK KPKNVLSLDL DLNLPATDDV DHREPKFSFA SKQQQQQQQQ QQQQQQQSAL  360
VFSAPTLVDC HY*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00487DAPTransfer from AT5G04390Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6146150.0JX614615.1 Gossypium hirsutum clone NBRI_GE58141 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012457885.10.0PREDICTED: zinc finger protein ZAT5-like
TrEMBLA0A0D2RRY90.0A0A0D2RRY9_G
STRINGGLYMA20G33480.12e-93(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22312775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.11e-59C2H2 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]